In situ hybridisation techniques for mRNA detection in whole mount Arabidopsis samples
Hejatko et al., Nat. Protoc. 2006; 1(4), 1939-1946
"Our protocol was adopted for automation using an in situ dedicated robot "InsituPro" from INTAVIS. To create a program to perform the procedure according to our protocol is rather simple as the manufacturer provides instructions for very intuitive and user friendly programming of the automate. Using this robot [...] tissue permeabilisation, hybridisation and washing steps until detection [...] can be performed."

Dynamic and Compensatory Responses of Arabidopsis Shoot and Floral Meristems to CLV3 Signaling
Müller et al., The Plant Cell 2006; 18,1188-1198

p63 regulates multiple signalling pathways required for ectodermal organogenesis and differentiation
Laurikkala et al., Development 2006; 133, 1553-1563

The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis
Bothe and Dietrich, Dev. Dynamics 2006; 235, 2845-2860

Large-scale expression screening by automated whole-mount in situ hybridization 
Quiring et al., Mechanisms of Development 2004; 121(7-8), 971-976

The Claudin-like Megatrachea Is Essential in Septate Junctions for the Epithelial Barrier Function in Drosophila
Behr et al., Developmental Cell, 2003; 5, 611–620

Automated in situ detection (AISD) of biomolecules
Plickert et al., Dev. Genes Evol 1997; 207, 362-367

Useful resources:

emap - The Edinburgh Mouse Atlas Project
A digital atlas of mouse development and database to be a resource for spatially mapped data such as in situ gene expression and cell lineage.

GEISHA - The Gallus gallus (chicken) EST and In Situ Hybridization Analysis database
A developing data base for chick ESTs and corresponding in situ images.

ZFIN - The zebrafish model organism database
A database containing everything starting from genes, ESTs, expression data up to the request for fish lines.

MEPD - Medaka Expression Patern Data Base
A database on in situ expression pattern of ESTs in the ricefish Medaka.

CK EST expression database of Flybase
The EST in situ expression database of flybase, a resource for Drosophila.

The gene expression database of TAIR
The gene expression resource of the TAIR Arabidopsis database. Please read their guidelines before linking or citing.

Xenopus express
Supplier of Pipid Frogs for laboratory research.